NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114347_1000257

Scaffold Ga0114347_1000257


Overview

Basic Information
Taxon OID3300008114 Open in IMG/M
Scaffold IDGa0114347_1000257 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-C-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)65953
Total Scaffold Genes103 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)58 (56.31%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7635Long. (o)-83.3309Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001507Metagenome / Metatranscriptome681Y
F005745Metagenome / Metatranscriptome391Y
F030091Metagenome / Metatranscriptome186Y
F039141Metagenome / Metatranscriptome164Y
F056609Metagenome / Metatranscriptome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0114347_1000257101F001507N/AMTQTYKPYTINELVQEIYEDNLSHFEFEENMGGDPCDCSLHITMNTIMKYWE*
Ga0114347_100025716F030091AGTAGGMSKNRENIPPDFYHHKPLRKFFIDGVIQDEALLGRLKIEYIRLLVSEMRLCGYVPRFDIDPDFTIRYNEIKGFFEFELSIHGVYAGKRKSEWIAGVDGTNPIPIQQNRSSESLQGRA*
Ga0114347_100025722F056609N/AMANYSVYEGKFPCKTCKKEVKTIRVYLDTGMASWMCSDKHLSECHLFKAGYKTKKKKDE*
Ga0114347_10002578F039141GAGGMSSPIQSVDPKYIDAVAAIPKPSEKKEDDSIKIATPDLILSNDETMSIEIMTDLIFEDIGGYELATISRHDLVNGQKVIYAPIKNLTDLYLQYNPNNVLRLQASDSYFKSLSLSILDRLPICGTGYDLQGTDPDLTKRTKIPNCKSIYIDPITGDLIINLINMKEGEQVEVEILTAGNIFDDTIYYGSSQ*
Ga0114347_100025799F005745AGGAMEISPTTLDPYLQRQVDHGISGIDIMHGHLKVLMLEAEQQLTEAQRIEEENDYSDAMESMERKYWEGQVDALVHLYSLTYDLSFAIAARVDE*
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