NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114347_1000475

Scaffold Ga0114347_1000475


Overview

Basic Information
Taxon OID3300008114 Open in IMG/M
Scaffold IDGa0114347_1000475 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-C-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)51775
Total Scaffold Genes77 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)57 (74.03%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7635Long. (o)-83.3309Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000220Metagenome / Metatranscriptome1544Y
F005025Metagenome / Metatranscriptome414Y
F033775Metagenome / Metatranscriptome176Y
F042750Metagenome / Metatranscriptome157Y
F046255Metagenome / Metatranscriptome151Y

Sequences

Protein IDFamilyRBSSequence
Ga0114347_100047537F033775AGGAGMGMQTDVKAISLAASGAVTDARTRVRGMVIEPGTSAGSVVLKDGGSSGTTVLTINTTANGETFNVVIPAEGVLFTTDAYAALTNAKLTVFYG*
Ga0114347_100047547F042750N/AMDDCAVMEDGPCTCGTDEILEELALEDAGLTAEDFE*
Ga0114347_100047551F005025AGGAGMDKKQVKAIADTEAKKMVKGHESRMHTKGMKAGGPTSMDRKMYGKNLSRAMNQKSGSK*
Ga0114347_100047563F046255N/AMEQLMNDKKIELTLGLVNAVMQYLGTRPYAEVADMIQAIREQAIPQVPMPEEAKPAEQPLIQ*
Ga0114347_100047566F000220AGCAGGMPNEKPNPDDTLSKVLAYVDSPFKLIAILVMGVVTFTGYFLWQNQELLVGAYRENQKMPSIAEDRIEDAASHLFKHTGAVVVAVFKVNPMFGTRVLHRAYTKEGRDKINDGLDVGLFTSNAANNRDVVALMAGEITCGSYTQAQSEIGLWYIEKGMTFGCRVGVPPDPSRFIGQITVGWAEQPEDMEKINNLLLIAATMLSRSKQ*
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