Scaffold Ga0114347

Basic Information
Taxon OID	3300008114 Open in IMG/M
Scaffold ID	Ga0114347_1000817 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-C-NA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-C-NA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Michigan

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	21993
Total Scaffold Genes	43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	39 (90.70%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (100.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

21993

Total Scaffold Genes

43 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

39 (90.70%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.7635	Long. (^o)	-83.3309	Alt. (m)	Depth (m)	4
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erie, USA

Coordinates

Lat. (^o)

41.7635

Long. (^o)

-83.3309

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003212	Metagenome / Metatranscriptome	500	Y
F011484	Metagenome	290	Y
F016784	Metagenome / Metatranscriptome	244	Y
F020684	Metagenome	222	Y
F023834	Metagenome	208	Y
F093528	Metagenome	106	Y
F095162	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114347_100081716	F095162	GGA	MTDEKRMASAAKAAVYYRNYRRARDRALIKLSHLHPEDYKELLEKEKVSDEQEGKTWIDINGNTIEPIIGTRTKARGTTFTQADTNQGNDGGKA*
Ga0114347_100081718	F093528	AGG	MAEDTITHVITLVVQAGQKWNKVELFDFSGGEPTPLAAGEGSNWRTALGEALSKISLSSDTPAVEKTINDIIKENVEGQGENE*
Ga0114347_100081719	F023834	AGGA	MGDSVMNKEYWQAKADLCRDLALIQIQEEETEKEAGMNLMRMTYALSMIDTYSEGKGE*
Ga0114347_10008172	F016784	AGGA	MEFNTYQEVKPEFREVIATSEYAAHYWFEQGWKACRLAFLLHDQAEKAKL*
Ga0114347_100081721	F003212	AGGTGG	MKDKWLVTLEIETYDGDPRQWDWGNLYIGEEDIKIISTDFKGRVLPTEGKGE*
Ga0114347_100081724	F011484	AGAAGG	MKELEQFLNVEAEWVLERLSTGTESSDRNYYQGRLDQLAQVRRLLNLPQIMRGEG*
Ga0114347_10008177	F020684	AGAAGG	MVMSKYALTIEEEATCVEVGYQRQKPYFGDPTKNINYSEGDLWETWQHVVCAGSELAFARMVGKNDFTPHYNKWKSELDIPGFGEIRYSFPPVRGMRYSTRDDDNLVYVLMSDGLCHKTRRNAPDWKGPEYTAIGWKLGSECKRDEWKYNDRTWYVPVIYLNSMESLILNG*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114347_1000817

Overview

Ecosystem & Geography

Associated Families

Sequences