Basic Information | |
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Taxon OID | 3300008114 Open in IMG/M |
Scaffold ID | Ga0114347_1002747 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-C-NA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Michigan |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 10883 |
Total Scaffold Genes | 32 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 16 (50.00%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erie, USA | |||||||
Coordinates | Lat. (o) | 41.7635 | Long. (o) | -83.3309 | Alt. (m) | Depth (m) | 4 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F000325 | Metagenome / Metatranscriptome | 1296 | Y |
F006543 | Metagenome / Metatranscriptome | 370 | Y |
F008812 | Metagenome / Metatranscriptome | 327 | Y |
F012108 | Metagenome / Metatranscriptome | 283 | Y |
F035281 | Metagenome / Metatranscriptome | 172 | Y |
F036210 | Metagenome / Metatranscriptome | 170 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0114347_10027471 | F035281 | AGGAG | MKNFVIAAMLVLGMVGSSYGGECVNGSCLLRSRVVNVTREVISVPVTVTRRTV |
Ga0114347_100274721 | F008812 | AGGAG | MIQWIGVIIALLGLAYNGVKDYQKGDIKIPQLPQKQVLTKPVYPVQYCLMAYDPNVNKVFYLHENGQWYDYAPQQRRYASTQEHYQNQGQATLGSQHGSQGGSGQHYLR* |
Ga0114347_100274725 | F000325 | AGGAG | MKTADGNDKLGKGCIVVSRPVGDTCPPDCDYLDNGCYAEQTEKQYKNARTAGFANVITEKHKIRAMILDAKRREKSIRWHERGDWFLNGELDLEYVANVTWACESILADGDTLPNMWFYTHIYDSRLVSLEKYMAVYASVHDDNDMNEAKSKGFKLFAWCDSDMKIAPKRPKHKAKADLWRQALPKLVVLNAAKFVVCPEIRRGRSVITCTGTKDSISCDMCVKGLANVLFPAH* |
Ga0114347_100274728 | F006543 | N/A | LEIVTLFGESKMKKFSFAVDIVADTLDRDTVVESIRECLSGSLPGDVHANVKAGEVKAFSEQGYKVWRARVTGVTAEQAGDAHNAKVEAEATA* |
Ga0114347_100274729 | F012108 | AGGA | MINLQLSVREAMNLATNCNLEIYERIVTAFEVALGVNQRCTVTITGGMTLDNRIKCIKAIRHHSGWDLKTAKDWTDVLVGGWKYDKFVPSSVGAKQSITLKTPEAAENLLRDLVEEGCEGFLS* |
Ga0114347_10027473 | F036210 | GAGG | MKTRYLNARNRSEIQRKYIDHILGTLDFMEIKDRLRDYFELEKDKESNASLEAEIRQEAPEVLVDNWEDLDEPSTLTKKEEFHHA* |
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