Basic Information | |
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Taxon OID | 3300008114 Open in IMG/M |
Scaffold ID | Ga0114347_1004784 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-C-NA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Michigan |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 7647 |
Total Scaffold Genes | 15 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (66.67%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erie, USA | |||||||
Coordinates | Lat. (o) | 41.7635 | Long. (o) | -83.3309 | Alt. (m) | Depth (m) | 4 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F000468 | Metagenome | 1102 | Y |
F002135 | Metagenome / Metatranscriptome | 590 | Y |
F088792 | Metagenome | 109 | N |
Protein ID | Family | RBS | Sequence |
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Ga0114347_100478410 | F088792 | GGAG | MEIVGYGFIIGCLIGAALYFWDEHRKEEIYDNGYYAGRAAGWKSCIDHQAKLQKLKVEQVFDYDKN* |
Ga0114347_10047843 | F000468 | GGA | MTVFTPDWKLTVGGVDYTDIAISDIQHQAGRTDIYQQPLPSYMQITLVALSGQTLPFDINDSFDLQVKDSTGSYVSLFGGDVTDVTVQVGATGASATVIEYTLLAMGSLTKLTKEIWDDNISQDEDGDQIYGILSSVLLGTWNDVPSASTWATYDATETWENAVNLGLGSIDQPGLYTMTAQSTVTDTIYNIISDIANSAFGYIYEDNQGNIGYADADHRQNYLLTNGYVELDARHALGAGLSTVMRSADVRNDIFINYGNNYNSQVTAIDTDSIALYGYKSESINSRVQGAVDAQAIADRYIAQRAYPIPAFQSITFPITNSEIDNADRDDLLAVFMGMPVHIQNLPSQISGGAFEGYVEGWSWSTRFNELFLTINVSPVAFSQVAMRWNTTPATEAWNTIDPNLTWEYATIIS* |
Ga0114347_10047848 | F002135 | N/A | MANTRKRTTRKKVNRRRVRHTPEPLSKLDQWYIAKHEMFKAARKAGFSESVALYLMDSPDSMPDWIVGDKGIIPTIPTPDEDDD* |
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