Basic Information | |
---|---|
Taxon OID | 3300008114 Open in IMG/M |
Scaffold ID | Ga0114347_1010923 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-C-NA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Michigan |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 5548 |
Total Scaffold Genes | 14 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (57.14%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
---|---|
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Lake Erie, USA | |||||||
Coordinates | Lat. (o) | 41.7635 | Long. (o) | -83.3309 | Alt. (m) | Depth (m) | 4 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000141 | Metagenome / Metatranscriptome | 1941 | Y |
F024063 | Metagenome | 207 | N |
F050976 | Metagenome | 144 | N |
F100682 | Metagenome | 102 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0114347_10109232 | F100682 | GGA | MPIATAEDWAKQNKLRQEWLADNPDATYIGWTSI* |
Ga0114347_10109233 | F050976 | N/A | MSNHYVSYLFSARAYLQGWRLGWEEVIVEDQMFNYIKKRYLPDLERSKEFDTWDCISQQSRMYIELKARRNHYTELLIEKSKYESLTITAVRKNYTAWYINATPLGLWAFNLTKLSKPVWKDRPMPTSTEFADKSQRIKQVGYLKLVDGIQM* |
Ga0114347_10109234 | F000141 | AGGA | MHPQFKCNGCKRDTEFLWLDELDTPEGFKAYQCMECGCVGIKNIAEALHIPDSDICRCDKCGSWKFETVVCHTCQLIGAK* |
Ga0114347_10109238 | F024063 | GGA | MTLELAIYLFIGLSMAWLLLVTRIDDLKQTYYWRGRKDGFDMHRRMIQNKIKSDEVFDYDKN* |
⦗Top⦘ |