NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114347_1013839

Scaffold Ga0114347_1013839


Overview

Basic Information
Taxon OID3300008114 Open in IMG/M
Scaffold IDGa0114347_1013839 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-C-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7416
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (84.21%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7635Long. (o)-83.3309Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003784Metagenome468Y
F037608Metagenome / Metatranscriptome167Y
F048269Metagenome / Metatranscriptome148Y
F068601Metagenome124Y
F087106Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0114347_10138391F048269N/AHALHYLQLDSKIKELEKERESLKESLQGSTGVTASGVEISWTTVKGRETVDAKEVEKLLGFVPKVVGNESVRLNIKTSGGK*
Ga0114347_101383914F068601GGGGGVRTDKPLSNLVKLSDIRQERERALSPYGPVRAGLTTSQRTSEEVRLMELLNSLESVVETLNFKSFTVYDTLNTAIEGVRAALCGITPKAGTDE*
Ga0114347_101383916F037608AGGTGGMGEVISFHPPKQELILLYEVVDESGNAEWGGNSEREALAWIATSPTAVRILVSGWTTDDDDAYLVGQPLDITAIVREASR*
Ga0114347_10138392F087106GGAGGMAANENTKFQINYKLADGTLINLYAADIKDLETGLTDLSMVAALIKSTSSELSGGSALATANAVIAQQFNATPVAAPVEAPAQPGAKVCKHGVMAYKTGTSAKGPWQGYMCAFFS*
Ga0114347_10138398F003784GGAMGTDGTDFAYYGLSHLGNQLREGDTSNMSNSNPLVDHLAVVGYRAGGVSTEDLTSFIESFASLRANRVKGVGHDQYAIAQGQKFESFTTSDTIRELIEELADASNYIDFLAIKLLNIQHTIDLVLPDCD*
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