Scaffold Ga0114347

Basic Information
Taxon OID	3300008114 Open in IMG/M
Scaffold ID	Ga0114347_1029140 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-C-NA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-C-NA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Michigan

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4718
Total Scaffold Genes	18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	16 (88.89%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (87.50%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

4718

Total Scaffold Genes

18 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

16 (88.89%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (87.50%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.7635	Long. (^o)	-83.3309	Alt. (m)	Depth (m)	4
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erie, USA

Coordinates

Lat. (^o)

41.7635

Long. (^o)

-83.3309

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006618	Metagenome	368	Y
F011756	Metagenome / Metatranscriptome	287	Y
F017469	Metagenome / Metatranscriptome	240	Y
F024719	Metagenome / Metatranscriptome	204	Y
F029678	Metagenome	187	Y
F042747	Metagenome / Metatranscriptome	157	Y
F046192	Metagenome	151	Y
F067515	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114347_102914011	F006618	AGGA	MSKIKQHLENEVVITHSNEENTGWKRYIAFNYQGNEYELTLFWEEFNGYDTFWRVPERTPDWVAEWDSEAHQGMSFEHYLDELTWEMGK*
Ga0114347_102914014	F017469	AGGAG	MKTICQFCGWEVSKPEWYNKQYDRSGYVCDNCLMDNATEREKEASK*
Ga0114347_102914015	F029678	AGGAGG	MKRVNGFIIFNRETGQKMATLPLTIPIGSTVEAYEKAGHKVGWDWEEGESE*
Ga0114347_102914016	F011756	GAG	MGDEYALTGGYEELINCLVCSKEYDRVEYRSDTCSDCEDEMIKRERESK*
Ga0114347_102914017	F024719	GAGG	VIELPNRGKMMVILYEVSDTQGIAIWGGENPVEALKWYRNSPTGSKIWVSQWEADEEDAKQVLEPMEITPIVLATITDCMERWGNGKS*
Ga0114347_10291402	F067515	N/A	MISYYTNETLKSTAQDIKNDFEISGATWEGVALEIARLQLSLKEFKKLGLDIDKGIDYGTWDGSYCANEKDITHYDPKCCTHDFESACACCLAECDDCQDEQNIQAI*
Ga0114347_10291403	F046192	AGGA	MAKTIKTQTLLADDSGAVWVEAELSEAQVKRVINSYKRAGIDLTPYGSPNQVIKQVEEINAFFTNDERSRPFMEAGKLQVIGVGF*
Ga0114347_10291409	F042747	GAGG	MLGYKYEDIQGFGSTLKLAELMAIDMGEAEVREGLLKIWDFFEGLLAEGYVEGE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114347_1029140

Overview

Ecosystem & Geography

Associated Families

Sequences