NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114347_1034313

Scaffold Ga0114347_1034313


Overview

Basic Information
Taxon OID3300008114 Open in IMG/M
Scaffold IDGa0114347_1034313 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-C-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2271
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7635Long. (o)-83.3309Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002827Metagenome / Metatranscriptome527Y
F005146Metagenome / Metatranscriptome410Y
F006743Metagenome / Metatranscriptome365Y
F041644Metagenome159Y
F042880Metagenome157Y
F051794Metagenome143N

Sequences

Protein IDFamilyRBSSequence
Ga0114347_103431310F006743GGAGGMRTENWQSNTPGLRLVGEGESGSASSPYGPMRAGLTTTHRTQLLVLSELLNSLEKEVEILHSKYCEAYVILIDVMERLARLTNSLSLINTTKE*
Ga0114347_10343132F041644GGAGMSLEFIIERLTSVQVGGFWALMQVITYALAIWLGLVIISKISDKRKGEGK*
Ga0114347_10343133F042880GGAGMASYTTVGELIEHLKGEDSNAPIIYQYYLAEHFEVSEEVFGQVARDFDSLIPCSDSYEAISREIDSKREEVNV*
Ga0114347_10343137F002827AGGGGGVNKEYYQAKADLCRDLFIKQVGEGDSKEAGANLIRMVNALNQINLINYKEEKGNEAN*
Ga0114347_10343138F005146AGGAGGMKLTNFYEVADRKGDTAWGGASAIDAIEWFRRGLDNSIYVSVWNEEDIEEPKLVIDKIDITKLVLTTIVSERGRG*
Ga0114347_10343139F051794GGAGGMKTIDKRKEKAERRAVWLRNYQRARGRALTKLAQQYPDQYKEILEQERLSDEANGKAWLDITGATDNSAGVLTNADGYNNTLRSEQTNGDKQNEGYLGGEK*
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