NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0114350_1000009

Scaffold Ga0114350_1000009


Overview

Basic Information
Taxon OID3300008116 Open in IMG/M
Scaffold IDGa0114350_1000009 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)152335
Total Scaffold Genes169 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)111 (65.68%)
Novel Protein Genes11 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)10 (90.91%)
Associated Families11

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7635Long. (o)-83.3309Alt. (m)Depth (m)4
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001360Metagenome / Metatranscriptome714Y
F004789Metagenome / Metatranscriptome423Y
F007028Metagenome / Metatranscriptome359Y
F007312Metagenome / Metatranscriptome353Y
F012571Metagenome279Y
F015212Metagenome / Metatranscriptome256Y
F078617Metagenome / Metatranscriptome116N
F085608Metagenome / Metatranscriptome111Y
F095373Metagenome105Y
F104603Metagenome100Y
F105034Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0114350_1000009120F015212AGGAMATQYPSGLDNFTNPTATDRLDSNTVPHHLQHANLNDAVEALQTVIGLNPAGSHLTLKDRIISAETLITGQSVLNGLTDVTINSVATGQVLRYNGSAWVNYAEENLVDGGSF*
Ga0114350_1000009125F001360AGGAGMSLAKFRKVGTKTGAGRLVVSEGIAPAAYLLPAAGLPTWYLDSEDDRFEIVIPKGTILSVVANASTGDAEVAPANGTASAVTWGDSMPSTWDPMDGATPSYSSGATDTVTVAARSVPVGVAQYDLYRPFDKGTSQGAGFITHGYVEYPMVDGINADVTVGSVIRADHMGRPVKAAAADFYNSSAVYSYLQVGKVVEVEKFATNFDDGLLSYMQLPSDPGALKTVFELTRSGTYSGKLGIRSNLDVHNVIGAFRVNLTL*
Ga0114350_1000009142F105034AGGAMNNWKMFINENDDFELPNFLYRTIMDLMKQSLDMGTLLSSDQQKLRAYKEQTKKLFKGKWYEIAKALEAFSIIDPCICSTQEKEVYCDVCKGARYIISNTLTADQMREVGLFTNAGTSSDIINKLQKSLNEILSEYP*
Ga0114350_100000922F007028AGAAGGMPKITRNAQEETVGSPLDQVVSNMAGEISLSSSPIFICGVNRKINIGNFENVDVYAGITIPLENISLSDKEAFSEAVKNAAAYGFSLVSKETGERYTLIKESQQTGR*
Ga0114350_100000934F004789GGAGMTTGNFYKNPSTKDCWVFCSSCNRCQDKGRYTKCNKCSGRYDPNGSIDAHPEDYCDCKNGVLRWRTQEGKLIMTRFKSNPFAGKVKYLKQSEDERDWDSYVKDMREKMNDPNWNPITIVDED*
Ga0114350_100000936F012571GAGGMAIRNPDDVIGVCSECKSDQPMGYMENSAFAQAGIAVPCKFCGGIVIITYRETRDQSLGNSDRERGIN*
Ga0114350_100000946F078617GAGGMTIRKKMQTRVFLSGAIEDVTSDFKYSWRDEATLLLDQRGFKAINPMDYALEEEDCEPKEIVDKNLFLQKSCDILLVEYTILYRAYIGTDFEMTWAHLNNQPVIVWAHQNLQHRIYLKFLATKVADTLEEAVEYISNTYPSKK*
Ga0114350_100000952F095373GGAMAAGKLNYIVVYKNSSQVYGSASKKIALESAPPEGCKLEDKRILFVTYEPDSEEISVHQVPQEEVLKAEIKEKKSNE*
Ga0114350_100000955F085608GAGGMSIQLLEQFVANNALTVELADKYLTLYLGESDWPEKLAQLWSVQKKKLGEDKAKEFIKKSVACACLSPVINKSAIPEEKHVLLFWVSGWPQFNERDWLSLFKDTIKTDMQIEKNRALILKEGIFDHIDIPPLTRQAYNWLYERLDKESFSSQDKKEEAVTKMKNLIKIYGGAVVCNLFTNYSSNVEKVLNWRSGYFVEKEIHKIYSTEQIIKIKKAEMQKTNSNYVKTIK*
Ga0114350_100000956F007312AGGAGMATFYVGRRPVLKGRNSNEMINSFKGTAGTYSFYPLFAKGLLDGAPDNHNVPGSGDRPGNRFLSQLFTGSTLYDGTTPLAGTFPDGKATYDGSRYRPLEYKGLAGAQAFGSGYGHAADRENDYALYSNYFFDGVTSAEVFASGYGHGPRTEAQGAAASFGLFRPTEFIGVASAQIFTSGYGQANTSSDYGRNKVREYKGLESTKAL*
Ga0114350_10000097F104603N/AMQTGGPFDGFMPMITDVVISGKTASITSDGQLVDVYCLTIKTLEKEYVFSVLPNDLQKLHFLILKVLMS*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.