Scaffold Ga0114350

Basic Information
Taxon OID	3300008116 Open in IMG/M
Scaffold ID	Ga0114350_1000538 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Michigan

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	39655
Total Scaffold Genes	66 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	45 (68.18%)
Novel Protein Genes	10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	8 (80.00%)
Associated Families	10

Scaffold Components

Scaffold Length (bps)

39655

Total Scaffold Genes

66 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

45 (68.18%)

Novel Protein Genes

10 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

8 (80.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.7635	Long. (^o)	-83.3309	Alt. (m)	Depth (m)	4
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erie, USA

Coordinates

Lat. (^o)

41.7635

Long. (^o)

-83.3309

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003378	Metagenome / Metatranscriptome	490	Y
F003768	Metagenome	469	Y
F006304	Metagenome / Metatranscriptome	376	Y
F022860	Metagenome / Metatranscriptome	212	Y
F027495	Metagenome	194	Y
F033780	Metagenome	176	Y
F045719	Metagenome / Metatranscriptome	152	Y
F056573	Metagenome	137	Y
F060870	Metagenome	132	Y
F078657	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114350_100053817	F078657	AGGAGG	VTDNQSIFYEAWISDLQRDLDSLREDKRELLRKVAQLEHLIAEYGNKLTNLIQQRGDE*
Ga0114350_100053818	F045719	GGAG	MSASWYKLKDESWGVKVRHEGQSGEQVEVTNKKGETKTVWLVARIAKFDDAQLWSVSNDAPPAAPKTLDEEPF*
Ga0114350_10005382	F022860	AGGA	MKRILDYITENSWTLAGTGLVLITLSGPTLRQALWITGVALVLHSVLTFTGGKDD*
Ga0114350_10005383	F003378	AGGGGG	MTDIMLKANATVAKFLDLGQRLFSLFLANALPAVTGGAVIGVSVAKSALLAGFMAVVQVIQKLASASTDGELTSEEIQEAFGKK*
Ga0114350_100053847	F056573	N/A	VSIFRPPTDDFLVLGIPPKEFDSQEVRLAYSLFRHFDAEPRGRNVFLLTNGTYTENEPNEIATIAKVYWGGTDNEVSADEVASLTAAGYGAYIS*
Ga0114350_100053848	F027495	AGG	MKHAETHPTLDVEGCFACRISHVRMSGVAMPTRHNVQHLNTKEKQLDKDLDAYKRIRKTGGQPTKIDGSAKLEKIAD*
Ga0114350_10005385	F060870	GAG	VDGGWALVLAAVVTAVGGIIVTVLQQFKKENHTDHQIVVGLLQVLRKSQMRVEDKVDRVDERLTSHLDSHASEGILDNGRTVHQNGVEATSKVS*
Ga0114350_100053851	F006304	N/A	MKRLSAAQKYAQLKKQTEGAGMTVREKAGKIVVSRRKKKKRG*
Ga0114350_100053861	F003768	GGTGG	MAHFAKVENGVVREVIVVGNGDAPTEAAGKAFIASIGLAGEWVQTSYNGNPVEGADRGKFAGIGDVWDGSKFVSEVAE*
Ga0114350_10005389	F033780	AGGA	MSCPWSLVAVHWIDAFDSSNGWINTKDYKPKTQHVVSVGWLWPDLLDGYVSVTCSWCPGEEPELDTVGMVTHIPQGMVQRVSILGEPDWNI*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114350_1000538

Overview

Ecosystem & Geography

Associated Families

Sequences