Scaffold Ga0114350

Basic Information
Taxon OID	3300008116 Open in IMG/M
Scaffold ID	Ga0114350_1002364 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Michigan

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	12906
Total Scaffold Genes	35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	25 (71.43%)
Novel Protein Genes	10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	10 (100.00%)
Associated Families	10

Scaffold Components

Scaffold Length (bps)

12906

Total Scaffold Genes

35 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

25 (71.43%)

Novel Protein Genes

10 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

10 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.7635	Long. (^o)	-83.3309	Alt. (m)	Depth (m)	4
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erie, USA

Coordinates

Lat. (^o)

41.7635

Long. (^o)

-83.3309

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005092	Metagenome / Metatranscriptome	412	Y
F013526	Metagenome / Metatranscriptome	270	Y
F017484	Metagenome / Metatranscriptome	240	Y
F026861	Metagenome / Metatranscriptome	196	Y
F029721	Metagenome / Metatranscriptome	187	Y
F034902	Metagenome / Metatranscriptome	173	Y
F049499	Metagenome	146	Y
F081257	Metagenome / Metatranscriptome	114	Y
F085710	Metagenome / Metatranscriptome	111	Y
F099312	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114350_100236411	F081257	AGGA	MKTLSYTAEKDGIEVEVLNRLMVSEYQINDLLDRLVANGYTILTTEIGDGDYSQHWQG*
Ga0114350_100236413	F017484	AGGAG	MGSLEIFEINENGAGWVSLENASASAKLDLELALLTKAEMKMLCFKCHVEIPRGNVCVNHKNVKGAVYFE*
Ga0114350_100236414	F013526	AGGAG	LSKKNVLISFVTDAETDLDAIFALNKVMYKLPESDAVKFDAFEILNVVE*
Ga0114350_100236415	F085710	AGGA	MDYLDYQDEIYLDIYLEFGAEAVTDPAYAEELLSKSQF*
Ga0114350_100236417	F026861	AGGA	MKLDEFKKLIEAQRQEIKLTNLEKIAKIVETTTKKGNN*
Ga0114350_100236421	F029721	AGGAG	MRSYSIEDLLVGQFYKPASLARRFFGGEIDFAEKRDDVWVGENYQAYSIRYRVSNSMKTEWATIAVKVSDL*
Ga0114350_100236423	F005092	AGGA	MNKMDKLEMALRLIANCQLCNGRGYDYWANGEDFDAEPCQCNIYDIILDEDGDVIYDNGLSTQYDLSIYATAEAN*
Ga0114350_100236426	F049499	AGG	MSATIIDMDYRLVDTLNSDQLEPDDLIGLGDEVVKIISISSLRHGYLLTYENEFGERDILEIGDEEIFELYILE*
Ga0114350_100236431	F034902	AGGA	MISTALAIQEATRDAVHDDEVMSMAAAIYHARHEVSEDDFIRMMYMYSAHLSAMTATLVTHACLTESQLNDMLETIKEMETMGKDIE*
Ga0114350_100236435	F099312	GGA	MSKESFLENENQMVIDAIYQEIGEQLVEDWVNSNLDEGQMY

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114350_1002364

Overview

Ecosystem & Geography

Associated Families

Sequences