Scaffold Ga0114350_1015856

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114350_1015856

Scaffold Ga0114350_1015856

Overview

Basic Information
Taxon OID	3300008116 Open in IMG/M
Scaffold ID	Ga0114350_1015856 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5534
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (5.88%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.7635	Long. (^o)	-83.3309	Alt. (m)		Depth (m)	4
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F028510	Metagenome	191	Y
F097324	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114350_10158561	F097324	N/A	MSINRTKNFIATIPMKSEEQVIEIKKVLEQIFGWVVLKGRHSDRKSVVKNWMKWKQNDVPWRLAQYIDVYLHPKNPNYNSTKGIHRQNMKLNDNSVITARMLGNMKLSFADGHYNTIQSKGGTPYQVIMNMHNKTYHKVVVTKTPKVHPHSKKPYGMVAKQIWQFMNNRVDATYSEMKTYYDVDIRGNQTMIDGGSFIHHHQSLRKPSTRRGWYLAKQLNGKYALRGC*
Ga0114350_101585613	F028510	N/A	MKNTCKQRTYECKCGALTKEYLWDNDLDKTKVKCSDCSKLLTKKNLVTTTKNDAVSIRTPTKNR*

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