NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114351_1011625

Scaffold Ga0114351_1011625


Overview

Basic Information
Taxon OID3300008117 Open in IMG/M
Scaffold IDGa0114351_1011625 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-C-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6970
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (36.36%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7026Long. (o)-83.2538Alt. (m)Depth (m)5.9
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006018Metagenome / Metatranscriptome383Y
F014619Metagenome / Metatranscriptome261N
F024047Metagenome / Metatranscriptome207N

Sequences

Protein IDFamilyRBSSequence
Ga0114351_10116251F024047N/AMTNVKKSDIVDWLKNVVEKKMVKELNVPNAKVYLSCDRPHPDVILETKNADGDL
Ga0114351_101162510F006018N/AMSVGCDFYQTCTNNSVNMFYKTKRKFEPFLDGTVCLSYGSGKNTNDYADNCYPNVLKKIYEYQS*
Ga0114351_10116258F014619N/AMDVDWKIQCVTFKYFDNIEELFKSFDINVCRIAYDGTNVIYGENILNEINSNKLKFNEGSIYYPSVTLKRLVKYVKMGYDIEDVDLKLLTHAFYKSKKKQIDILDQDLLTKKPIQTYEGLK*
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