Basic Information | |
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Taxon OID | 3300008117 Open in IMG/M |
Scaffold ID | Ga0114351_1025103 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-C-NA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Michigan |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 6180 |
Total Scaffold Genes | 12 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (83.33%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erie, USA | |||||||
Coordinates | Lat. (o) | 41.7026 | Long. (o) | -83.2538 | Alt. (m) | Depth (m) | 5.9 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F010232 | Metagenome / Metatranscriptome | 306 | Y |
F051888 | Metagenome / Metatranscriptome | 143 | Y |
F056557 | Metagenome | 137 | Y |
F067677 | Metagenome / Metatranscriptome | 125 | N |
Protein ID | Family | RBS | Sequence |
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Ga0114351_102510310 | F010232 | AGG | MRSREELLKIKEAFAYAMMDMLDVYDELIGNTPRKLWVQPEPTVNDLVKNEEESNA* |
Ga0114351_10251037 | F067677 | GGA | MYLVTAWDFPLRLVLGEKSLSVKEIIMNKFSFENARVNKVWDNKNRFNLGILDTRAVAQPDGSYQSVFVASRIVTTANPDHLEFXXXXXAVVNINGYMETKTGKKPGTWYDNLVITDIALA* |
Ga0114351_10251038 | F051888 | N/A | MTSFALSSSTQSFSCSHENPATQLDSREEYCVECNLQQEGSSVESALNLHEINRCEQESEPTLSIDIPDEKGYNHQWTNRDGEYLEGAYDITDRPPGWLFLGKHVFPMFKQDELNAYLALPSWATICSTCHYQINKYMGCLEH* |
Ga0114351_10251039 | F056557 | AGGAG | MYLDTGTMIGIMIALIASILTIGYSIYIIKTQNEIIQRMSNATATRRKMER* |
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