NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0114351_1025103

Scaffold Ga0114351_1025103


Overview

Basic Information
Taxon OID3300008117 Open in IMG/M
Scaffold IDGa0114351_1025103 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-C-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6180
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (83.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7026Long. (o)-83.2538Alt. (m)Depth (m)5.9
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010232Metagenome / Metatranscriptome306Y
F051888Metagenome / Metatranscriptome143Y
F056557Metagenome137Y
F067677Metagenome / Metatranscriptome125N

Sequences

Protein IDFamilyRBSSequence
Ga0114351_102510310F010232AGGMRSREELLKIKEAFAYAMMDMLDVYDELIGNTPRKLWVQPEPTVNDLVKNEEESNA*
Ga0114351_10251037F067677GGAMYLVTAWDFPLRLVLGEKSLSVKEIIMNKFSFENARVNKVWDNKNRFNLGILDTRAVAQPDGSYQSVFVASRIVTTANPDHLEFXXXXXAVVNINGYMETKTGKKPGTWYDNLVITDIALA*
Ga0114351_10251038F051888N/AMTSFALSSSTQSFSCSHENPATQLDSREEYCVECNLQQEGSSVESALNLHEINRCEQESEPTLSIDIPDEKGYNHQWTNRDGEYLEGAYDITDRPPGWLFLGKHVFPMFKQDELNAYLALPSWATICSTCHYQINKYMGCLEH*
Ga0114351_10251039F056557AGGAGMYLDTGTMIGIMIALIASILTIGYSIYIIKTQNEIIQRMSNATATRRKMER*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.