NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114355_1002182

Scaffold Ga0114355_1002182


Overview

Basic Information
Taxon OID3300008120 Open in IMG/M
Scaffold IDGa0114355_1002182 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-3-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12568
Total Scaffold Genes39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (15.38%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7026Long. (o)-83.2538Alt. (m)Depth (m)5.9
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031454Metagenome / Metatranscriptome182Y
F048940Metagenome / Metatranscriptome147Y
F058096Metagenome / Metatranscriptome135Y
F082582Metagenome / Metatranscriptome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0114355_100218218F082582N/AMIVDFSKDVMLGMLRKGATGNQILDILDVIVPNQTELTREQVCEDLAIADCPENDDEIAAYMAAV*
Ga0114355_100218224F058096N/AMNAQLSIDECKVMWVVGALERLATLGMIGPDIPLQLSADAVEDYMEIDNHRNLLFESDFEIVSIFNALSKDECVPEPEPDDIDAIIDLILQYKNNRTEIVKFALSHQTV*
Ga0114355_100218230F048940N/AMTAAQRMEKQFFINFISLINEVQGKTKLPSQIVKNRKSAWVKQVSNPKQKKDALSFV*
Ga0114355_100218239F031454N/AMTFMNDSTLDLFCQHDDEMYADEYAMELERKAAELEITVDYYMMEFV*
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