NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114355_1103525

Scaffold Ga0114355_1103525


Overview

Basic Information
Taxon OID3300008120 Open in IMG/M
Scaffold IDGa0114355_1103525 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-3-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1113
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7026Long. (o)-83.2538Alt. (m)Depth (m)5.9
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006181Metagenome / Metatranscriptome379Y
F019468Metagenome / Metatranscriptome229N
F070026Metagenome / Metatranscriptome123N

Sequences

Protein IDFamilyRBSSequence
Ga0114355_11035251F006181N/AMKNIVHVIYPDEAVHSFVMDTDMVVSDILERVFAEWNHGSGMESELFIRSKKRSLSVNDVVGVNGKYYLCESFGWNEVTPQFVNELEEEVSNHPNRIQGAWFALSSVMRTRETKNNLELV
Ga0114355_11035252F019468N/AMTIEKTYKLSIKDQSFFLSEEEVTKLYEQCRKALNIDNANPYFPNYPPGVRKFDDDKTKPLNPTTPSIPYPYDTYPWYTPKHPNDTGHPYWTGPTTTCGTINAGEGICVMDTNWQTNLCNTVKSSNDINFISDDMAVHEDNQKWRSSVEQALDKLKENKKV*
Ga0114355_11035253F070026AGAAGGMKKIYIEKLAEVPGGLPARSMDEHIMGKPNDNYSSIPIEYNLEGVLSYDIEVGKSVVVGRTKRNGVE
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