NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114359_1059552

Scaffold Ga0114359_1059552


Overview

Basic Information
Taxon OID3300008122 Open in IMG/M
Scaffold IDGa0114359_1059552 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample HABS-E2014-0124-100-LTR
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1372
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7635Long. (o)-83.3309Alt. (m)Depth (m)4.8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010669Metagenome / Metatranscriptome300Y
F012769Metagenome / Metatranscriptome277N
F065718Metagenome / Metatranscriptome127N

Sequences

Protein IDFamilyRBSSequence
Ga0114359_10595521F065718N/AKPLERIWNSKKVIRKIDPGWVLADKVTLLEHQVLNQIDTIDISVPWDDVENKSRYLDLYKTIIRLKAIHPNWDMYLEDSKNHHFCKCLSCSEVKRRYQEMLDATSSEESSSEEENKA*
Ga0114359_10595522F012769AGAAGMKFQDPKFKVRELVKDKFDPILKEEYQEGTAIKVFKASIEVIRQSGNRLTEQHYLPYSPEEKEGVIKEVIVQISEWKNRILNRRQKEKITRIDRALSKKILDILAEYLRALEETDIAKRQKQLYHVDAVAAITELQVNRKFASPERKPVKRKIH*
Ga0114359_10595523F010669N/AMELELTRMEQSEDDLTDPSDSEDSNMGISETHWPSDPSEIKCRLHAYITHEQEHLIELLNELEPEVQTSSANIIVEKIKRCFRCIDDITEYTTQFLRQARLIEMRDFTGFYYEIENDAKQAIRQALTVLSTLRRGNLSRLASSVKELVKELDDIRILVSKKTLEQIEETLQEYGTRRTYTLRQI
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