NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114359_1088972

Scaffold Ga0114359_1088972


Overview

Basic Information
Taxon OID3300008122 Open in IMG/M
Scaffold IDGa0114359_1088972 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample HABS-E2014-0124-100-LTR
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1094
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7635Long. (o)-83.3309Alt. (m)Depth (m)4.8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011134Metagenome / Metatranscriptome294N
F089846Metagenome / Metatranscriptome108N
F100356Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0114359_10889721F100356AGTAGMEYRTLKNEIELLESVQRLMNEVNTELDFNANYITLLELFSTMKRLKIIQPKWIFKVTRTPPLEENIFFRGKKKN*
Ga0114359_10889722F011134N/AMCVDDINTEIIVINESNVMQYEKLNEVLINLRRLDPKWNIDSNSDKPWSFKYMLEGILRCRILEIDISDLDTLDMDGYENFHDSLRDLRAEDPGWSINNTRRNFPILLTPEDLGLMNNHLESREK*
Ga0114359_10889723F089846N/AMDSNQNIFRNINKAIRAITPGVYNDSQVENLMKIYDVIVAEKEVNPSWQLPSPETRKRKKPRLK*
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