NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114898_1005224

Scaffold Ga0114898_1005224


Overview

Basic Information
Taxon OID3300008216 Open in IMG/M
Scaffold IDGa0114898_1005224 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5782
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (54.55%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium TMED10(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)38.55Long. (o)13.18Alt. (m)Depth (m)3511
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001136Metagenome / Metatranscriptome767Y
F004849Metagenome421Y
F004908Metagenome / Metatranscriptome419Y
F012880Metagenome276Y
F016013Metagenome250Y

Sequences

Protein IDFamilyRBSSequence
Ga0114898_100522411F004908N/AATLKIIDMFQVEDGAINPKTGLTEKPSWYVRFEDMSDRVLFKSKLLELLSMGFRKTVENFKAGKATTSAGGEARFWVVVFQDYEVRLQTKAQIMDVVTEGHRNREDEDNARFERNGRKAEDGITLD*
Ga0114898_10052242F004849AGGAMTKSEFKTQVGMGFFSCKWINNAGTTSKIKRGILGGYAWRHTNNPVPTNVKEHNDYVLVYRVGNGLLPQHRRWANVNPNTIIELNGVAV*
Ga0114898_10052243F012880GGAGMKFNTITLIWSIALMLLTFNVCLLSIDWQFTNTIVYKFMLVINGLMLGLVINEWSNS*
Ga0114898_10052244F016013GGAGMVNNLTTINKVDVSPLLKEVVEYAKDQNAVGDLESLISKVPNKDSLDWKLISGVLCNAIIEWVAKDTNNRKDLIVHLQSEVGYLLQRLGLTM*
Ga0114898_10052245F001136GAGMVVDHEINIALNRIADAIEENGETLKRIADHYDGVVPVMTRNQKRAESLAEEQERSFGQQVKDIFRPVEN*
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Institute for Fundamental Biomedical Research
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