NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114898_1011887

Scaffold Ga0114898_1011887


Overview

Basic Information
Taxon OID3300008216 Open in IMG/M
Scaffold IDGa0114898_1011887 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3299
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (78.57%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)38.55Long. (o)13.18Alt. (m)Depth (m)3511
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006867Metagenome / Metatranscriptome363Y
F015346Metagenome / Metatranscriptome255Y
F062169Metagenome / Metatranscriptome131N
F105878Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0114898_10118872F062169AGGAGMPVQEHIEKILGAVGQGALDAWYDAINEHPQNAMEIHDVVVEHLVENTFMY*
Ga0114898_10118873F006867GAGGMSVAKEIQKRCRIQPGMLVNSNAATEVNVIALVIGLSPSCKFDRDYEDADEHLFYQCEPIDGGQSFVDYVCNMEQIS*
Ga0114898_10118874F105878GGAGMKVGQIIKINKSGLAQFAPVIRAKLEGEIGLVIQEKYDLSHKLDQDKLPERVKVYPSLVRFESLQNMNFLDMGAVMVFPDQAEVLS*
Ga0114898_10118877F015346AGGAMNPEYVSYKIGELVSANATKALGVVTRSNYWALDEYLGGETQFVDVLFGAHQSTQYPIEYLAKVK*
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