NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114898_1034520

Scaffold Ga0114898_1034520


Overview

Basic Information
Taxon OID3300008216 Open in IMG/M
Scaffold IDGa0114898_1034520 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1674
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (37.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)38.55Long. (o)13.18Alt. (m)Depth (m)3511
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022083Metagenome / Metatranscriptome216Y
F040340Metagenome / Metatranscriptome162Y
F089036Metagenome / Metatranscriptome109N

Sequences

Protein IDFamilyRBSSequence
Ga0114898_10345205F022083N/AMLIQAIGFIGAMVYGYGQLNARLQFVEHQAEMNDKTIKEMKSLQDAPIPSDVRQDEKLRRIEEEIVRLRDGKGD*
Ga0114898_10345206F040340N/AVIAIVIVIADARGTLEPTIKSWEKKLGIPVPEEVDGKANIRE*
Ga0114898_10345207F089036AGGAMKKIDLQGAILAGIGTLIVGLTGWLMSTTLGVDKDQDVMEVRLDHAEENYDKLRLDSPAHSMDTCPVCMHMKLGYK*
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