NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114899_1005874

Scaffold Ga0114899_1005874


Overview

Basic Information
Taxon OID3300008217 Open in IMG/M
Scaffold IDGa0114899_1005874 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_215
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5678
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (66.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)38.09Long. (o)11.46Alt. (m)Depth (m)1200
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001992Metagenome607Y
F003616Metagenome477Y
F036732Metagenome169N
F038477Metagenome166Y
F047719Metagenome / Metatranscriptome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0114899_100587410F003616GAGGLIWSEKLGHEIGTYNSLGGMKILPKPFIHSTLNTIVTCRICKGTGLNAITHDSGLVTLNKCVLCKGVKRRSNRVG*
Ga0114899_100587413F001992AGGMVVQKLLLQEGLKRTKQYSVSVLGYDFIGLAMRLGLFLTVGVLIQAYFTATIAGGSWLNSIAGFFNIKFPDTLPEWLTKLFTTGYNGIAFWQILQVTAILLVIVEYMQYDRMLKEKDQAPNATSQAVFLIIAIALSLMVFPQTIQKIKEMRILQNG*
Ga0114899_100587415F036732N/AYVTPAPYLKTAVMKRFTPAGIALHLHADLSHADGVYKYTKNRVSNLGQ*
Ga0114899_10058742F047719GGAMSIIIEETDILKTAIRVIKIEKFQRFCLKCGKILPTKIKQNYAHNCEKPDFLL*
Ga0114899_10058746F038477N/AMVKMPEYLKKAIAYFKNNEIPRDILISVGSAVAGAFVFDRILRRDEDQDEDS*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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