NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114899_1011338

Scaffold Ga0114899_1011338


Overview

Basic Information
Taxon OID3300008217 Open in IMG/M
Scaffold IDGa0114899_1011338 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_215
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3709
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (37.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)38.09Long. (o)11.46Alt. (m)Depth (m)1200
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003135Metagenome / Metatranscriptome505Y
F078583Metagenome116Y
F093716Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0114899_10113381F093716N/AMEKNDLLKRVEKLEQDSHPPVSWREKIENIIKRVDELTRLYGEIITNLMKQRK*
Ga0114899_10113382F003135GGAMDIIGIIETVGIPVAVAIGLGYALMYLIKFITKDVTVDIKNLYNIVVKLIDSNREAKDEVKKTMTGVNVIKDIMIKLFRNGKK*
Ga0114899_10113384F078583N/AMDTLKNVFKSPIGTAFEGTIGILITLWDALPEIIRIGIGIATFVHIVIRIKRDIK*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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