Basic Information | |
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Taxon OID | 3300008217 Open in IMG/M |
Scaffold ID | Ga0114899_1011755 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_215 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3622 |
Total Scaffold Genes | 9 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (66.67%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition |
Source Dataset Sampling Location | ||||||||
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Location Name | Mediterranean Sea | |||||||
Coordinates | Lat. (o) | 38.09 | Long. (o) | 11.46 | Alt. (m) | Depth (m) | 1200 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F003515 | Metagenome / Metatranscriptome | 482 | Y |
F010426 | Metagenome / Metatranscriptome | 304 | Y |
F019729 | Metagenome / Metatranscriptome | 228 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0114899_10117552 | F003515 | GAG | MKTLIIALTLLVSSSSLAGPPKGMVRQMIPFPAMCLPATVAENHFAVLMGALITDYGVHISMTFSSSPDQSQRVAIIENPHSGLAGVLMITDEQTCIAFSGEDRKAFVRPPDHPIGEMNKDTET* |
Ga0114899_10117556 | F019729 | GAGG | MSHLKDINMSWSLHLWYALGLAGRLFLLSLTAVAHGMFPFLFTYKVSDGVNKLNEELS* |
Ga0114899_10117558 | F010426 | N/A | MKYVLKGDNMEKWKELSAGKKKFWIAVGIIVVIAVVGWATGWWSSPEAHV* |
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