NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114904_1053103

Scaffold Ga0114904_1053103


Overview

Basic Information
Taxon OID3300008218 Open in IMG/M
Scaffold IDGa0114904_1053103 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s6
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1055
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)39.48Long. (o)5.24Alt. (m)Depth (m)2820
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007978Metagenome / Metatranscriptome341Y
F008820Metagenome / Metatranscriptome327Y
F095590Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0114904_10531031F007978N/ADRLQGLEGTAVTGVYGRIQSVTVKKYDTDPVSWACLYNVVLHASAVKRNATGEYPEWGNRLNSREIQHFTCTYDPTSNSNPYAQAYADLKTKLAAGGSPIATSIADA*
Ga0114904_10531032F008820AGGAGGMANLTPYLTEKYTKMIAEITADLGKTADDLANAQNIIRALKNPDMMVNGASLTLDMVQIMENGDIRLLPPTPAPITETCVKAPEPDKNGKKPEPAKEPVHAS*
Ga0114904_10531033F095590AGGAMQASQQVYEDAQYQATAPIGPQAPIPAGVHNIELSWDRKRGYMRIVIGGERWWFKEYLGKAQVLSCDNKRGRLNLRAMARIDNETLTMYRDPAAPPHAEVEGVRREKTHNRLCYRRATEEWRLRDERLEWNHPDALVFTKSY
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