NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114904_1090046

Scaffold Ga0114904_1090046


Overview

Basic Information
Taxon OID3300008218 Open in IMG/M
Scaffold IDGa0114904_1090046 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s6
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)755
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)39.48Long. (o)5.24Alt. (m)Depth (m)2820
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008925Metagenome326Y
F012581Metagenome279N
F029779Metagenome187Y

Sequences

Protein IDFamilyRBSSequence
Ga0114904_10900461F008925AGGAGMTTKSKPTINAVTLNLINKLKKIDDTINEGAWEYIHLGDILRLQDAFHTAINHFDLKKKGGIGEYGADEGKYTQFWHSDYVCHTDPSAFDPSKVEEEDKNEK*
Ga0114904_10900462F029779AGGAGMMSDKEKYEELCEALVGIDATERYTHEDILSYIYNLKDTEEKYYDNKK*
Ga0114904_10900463F012581AGGAGMSKYTLYAKKVYYYRKDINAQDRKSAEKRGADYEADDNAERLFEPSGEEFYITSIEESDDE*
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Institute for Fundamental Biomedical Research
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