Scaffold Ga0114905_1025905

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114905_1025905

Scaffold Ga0114905_1025905

Overview

Basic Information
Taxon OID	3300008219 Open in IMG/M
Scaffold ID	Ga0114905_1025905 Open in IMG/M
Source Dataset Name	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_b05
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2276
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	Mediterranean Sea
Coordinates	Lat. (^o)	40.24	Long. (^o)	2.3	Alt. (m)		Depth (m)	1876
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003616	Metagenome	477	Y
F020713	Metagenome	222	Y
F038477	Metagenome	166	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114905_10259051	F020713	N/A	TENFNPYYYGKNIINIVQFKTPNGVTLLVKENRLRFTETERDEIINYDEDMKGNTRATVESFVWEWIDKPAGAFSSKYTIDISEKEPPKPMTPGFMGAGVAGAIAGLILIGFIADHKRGK
Ga0114905_10259053	F003616	AGGAGG	LIWSEKLGHEIGTYNSLGGLRINPKPFIHSTLNTIVICRICKGTGLNAITHDSGLVTLNKCVLCKGDKRRSNRIG*
Ga0114905_10259056	F038477	AGG	MPVHPHVSGGLQKLINYFKNNEIPRDILISVGSAVAGAFVFDRILRRDKEEDD*

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