Scaffold Ga0114905_1054562

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114905_1054562

Scaffold Ga0114905_1054562

Overview

Basic Information
Taxon OID	3300008219 Open in IMG/M
Scaffold ID	Ga0114905_1054562 Open in IMG/M
Source Dataset Name	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_b05
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1461
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	Mediterranean Sea
Coordinates	Lat. (^o)	40.24	Long. (^o)	2.3	Alt. (m)		Depth (m)	1876
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003706	Metagenome	473	N
F015220	Metagenome	256	Y
F051201	Metagenome / Metatranscriptome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114905_10545622	F003706	GGA	MSEVSDLEIGRLIQKVENLQVMVKEQNDRLDKLDQQLERTRGIGIGVVLATVGLSGIGGSLFTRWLSG*
Ga0114905_10545623	F015220	AGGTGG	MNVDAKFFGAILFLIAQTGGAIWWASGLSSEVDRLAGIQGEAIPALEAEAVQCGKAIHDQGQQIERIKELTAETSGLDVLAFKVEELRKEISGLREVDKDIMTQHEKIFEWMANSSPMQQKGGVNPYGG*
Ga0114905_10545626	F051201	AGGTGG	VTITDSAQQKVDQTLNGEGFLGVHLEGGGCSGYQI

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