NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114905_1091237

Scaffold Ga0114905_1091237


Overview

Basic Information
Taxon OID3300008219 Open in IMG/M
Scaffold IDGa0114905_1091237 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_b05
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1065
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)40.24Long. (o)2.3Alt. (m)Depth (m)1876
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018619Metagenome234Y
F083250Metagenome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0114905_10912372F018619GGAMAVAGDLNTHIRDNLLVLSTHAHSGAAGMGSTTLSGVALSALAVPVLADQSGNPSTAGRLQRNGNNLVYYGAALVGLYADAVAGTASLRTLGTGSTQAAAGNHSHL*
Ga0114905_10912373F083250AGGAGMAWTAPRDWTGITNDIVTAAMLNVDVRDNLGVLSTHTHTGSAGQGGTSMSGLTLAALTTLTFADQSANPDAAGELQRNGNDLLFYGASVVNLTAADASAGTAS

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