Scaffold Ga0114910_1044060

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114910_1044060

Scaffold Ga0114910_1044060

Overview

Basic Information
Taxon OID	3300008220 Open in IMG/M
Scaffold ID	Ga0114910_1044060 Open in IMG/M
Source Dataset Name	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_908
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1452
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium TMED104	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	Mediterranean Sea
Coordinates	Lat. (^o)	43.02	Long. (^o)	8.37	Alt. (m)		Depth (m)	2641
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F039705	Metagenome	163	N
F042012	Metagenome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114910_10440601	F039705	N/A	MGYRKNKLEYEPILAPEDEAPIEYANLDNSLNRRQRNFIWQAVNNPRLTLVECAHKAGYKDARQSANKLMNHPVIRKEYNYLMNEAKKKYELNYDRAVQDLYDIRDKALEAG
Ga0114910_10440603	F042012	AGGAG	MSREKKDYVVMDEDITIGCLDHGAFLATPFEHLQGFGCPICRHEEVMKVIKEMNDRLDYCIEHEANAADNHTPIQAGSYSMILHEMYGKTKKILDEYQEIRGKTKV*

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