NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105356_10328391

Scaffold Ga0105356_10328391


Overview

Basic Information
Taxon OID3300008222 Open in IMG/M
Scaffold IDGa0105356_10328391 Open in IMG/M
Source Dataset NameMethane-oxidizing microbial communities from mesocosms in the Gulf of Mexico - GOM9D Gulf of Mexico
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)827
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Methane Seep Mesocosm → Methane-Oxidizing Microbial Communities From Mesocosms In The Gulf Of Mexico And Hudson Canyon, Usa

Source Dataset Sampling Location
Location NameGulf of Mexico
CoordinatesLat. (o)27.37Long. (o)-90.57Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011337Metagenome292Y

Sequences

Protein IDFamilyRBSSequence
Ga0105356_103283911F011337N/APKPVRTTVFHLTDYNGLGKLKKMQGGKRSISAFFNIDDIVIQTGIKSEGGYVVEMDADVLVASQDDISSQPDKTGRRWVTLSSLMNKPTDPDPGLGGGAKLKSMEKDISGMLVDIVTKHSDITPLPNINKAWGYLGKSVGGKEKSLIIKDYIDGMEKIMKKNSKILGTLLTDYTKKRIQEPDPDSGDKPMWDELVVNNFKIQKIHVGPEFSPDFAELVKGEGGGRMYTFANKDDDIDGLPFELYQDVGDMVDYITRKVQSIKL*
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