NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105356_10431593

Scaffold Ga0105356_10431593


Overview

Basic Information
Taxon OID3300008222 Open in IMG/M
Scaffold IDGa0105356_10431593 Open in IMG/M
Source Dataset NameMethane-oxidizing microbial communities from mesocosms in the Gulf of Mexico - GOM9D Gulf of Mexico
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)681
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Methane Seep Mesocosm → Methane-Oxidizing Microbial Communities From Mesocosms In The Gulf Of Mexico And Hudson Canyon, Usa

Source Dataset Sampling Location
Location NameGulf of Mexico
CoordinatesLat. (o)27.37Long. (o)-90.57Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022673Metagenome213Y
F031898Metagenome181Y
F072444Metagenome121N

Sequences

Protein IDFamilyRBSSequence
Ga0105356_104315931F072444N/AMERENNSFWEIAEIIDRELSILRKMRPVGPKEKALLKKMVEDKEKEHEKRTNSQP*
Ga0105356_104315932F022673AGGAMKREQIVSHRVEIAEKIHEELLVSLELERKLLKKELTLQETMSERVEVRKDLMNCERKIKDLTEQLQKENDRSKVTKWNNQP*
Ga0105356_104315933F031898AGGAGMEQPALKDFQKEIEEMNDDDARLKIIKDWEKYRERKDLGIRNYPESCMERMLSDDQVHGI
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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