Basic Information | |
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Taxon OID | 3300008225 Open in IMG/M |
Scaffold ID | Ga0105352_1122507 Open in IMG/M |
Source Dataset Name | Methane-oxidizing microbial communities from mesocosms in the Hudson Canyon - EN8B Hudson Canyon |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 586 |
Total Scaffold Genes | 2 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → unclassified Methylococcaceae → Methylococcaceae bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Methane Seep Mesocosm → Methane-Oxidizing Microbial Communities From Mesocosms In The Gulf Of Mexico And Hudson Canyon, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Hudson Canyon | |||||||
Coordinates | Lat. (o) | 39.29 | Long. (o) | -72.2 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F058538 | Metagenome / Metatranscriptome | 135 | N |
Protein ID | Family | RBS | Sequence |
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Ga0105352_11225072 | F058538 | GAG | MYSQYETTVINRKRLHDLLTWVNQKYYLEYEVVQENRDVFYVIFHDLNIKQTVAIQKQIKGSSQPEHFDMH* |
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