NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105349_10041323

Scaffold Ga0105349_10041323


Overview

Basic Information
Taxon OID3300008253 Open in IMG/M
Scaffold IDGa0105349_10041323 Open in IMG/M
Source Dataset NameMethane-oxidizing microbial communities from mesocosms in the Hudson Canyon - EN1B Hudson Canyon
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1945
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Methane Seep Mesocosm → Methane-Oxidizing Microbial Communities From Mesocosms In The Gulf Of Mexico And Hudson Canyon, Usa

Source Dataset Sampling Location
Location NameHudson Canyon
CoordinatesLat. (o)39.55Long. (o)-72.4Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037425Metagenome / Metatranscriptome168Y
F039346Metagenome / Metatranscriptome164Y
F044731Metagenome / Metatranscriptome154Y

Sequences

Protein IDFamilyRBSSequence
Ga0105349_100413232F037425GGAMAWDDFRKQYQGIIKNLLNNVDICNERYIKSGDEGYMVQRKVYVKEIEEIKTMIKKKERELGYY*
Ga0105349_100413233F044731GAGMTLEEIYRKYEKLTLEICTGEATHDNTLECAGAMMGQAMKLYKLVLSPEDFDALMHIISQASGLDGETLNKDDFPSGTLH*
Ga0105349_100413235F039346AGGAMYSSFVITLIECLEIAFITLLISQTKVHKPTVVTYGSLGLLGGLLSAYYLHDMLENYEWLMYAILSSLFFYLFVKNKDIQKHIKEHVESITGASSIVLFLTAFFIYGRESFEIFSNLFLNPEASWSAAICAAIVAIWLYMFARDSKYTSYVFKFGYWAYLGFALWFGYEALEHLHIL*
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