NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0100403_1000302

Scaffold Ga0100403_1000302


Overview

Basic Information
Taxon OID3300008255 Open in IMG/M
Scaffold IDGa0100403_1000302 Open in IMG/M
Source Dataset NameGroundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-01t
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)46278
Total Scaffold Genes64 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (21.88%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Aquifer → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Source Dataset Sampling Location
Location NameUSA: Utah
CoordinatesLat. (o)38.9383Long. (o)-110.1342Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034486Metagenome / Metatranscriptome174Y
F044910Metagenome153Y
F085177Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0100403_100030211F034486N/AMDEQEIPVEQSLDQRKIKLAQSEHAPVIIELMKDITAKTPIVAETEWKTIVNAITLEVQGTMLRKMVDYLEDIRKGGLFEPKE*
Ga0100403_10003025F044910N/AMLQDSHTRKISIPVTAPIGDTTVIAAVDGAWIYVHELIGDLASAGNLTIKAGSRTLAAFTLDSGQGITEQDEPGEDNAPRFECRPGEAFILTVTGGTFNGACHYSLRY*
Ga0100403_10003026F085177N/AMVGTINDYAVIVNNVLKHVAPKVSPNVKPEYLDFMYKVDNNERIYTDVGVTGLGMGEIIPDGGIGASDAPIQGYSKNYTQMHFTKKVRLTFQTNFFLFESPAAKIKSSVKSKVLDGKNAIEHAKNYFAQSLLAQGFNTSFTWTPINNVGVSTPVSTIGADAVEYWSQIHPREDGGAAWSNVIVDGATNSPQFTYSSLLAARRLHSLKKDGRGNPLISQLDTLVVRAGSTSAQFAKTIKATIDKGLAPQQTNVFNNAPATDTFKIVELSPYENLAMDGLMWGMFDSNMMNEDYGFKYIEALPTRAEPAVVDALGNQDLVMNFNSLAVMGASDLRGWMWSDGDGATV*
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