Scaffold Ga0100403

Basic Information
Taxon OID	3300008255 Open in IMG/M
Scaffold ID	Ga0100403_1000307 Open in IMG/M
Source Dataset Name	Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-01t
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300008255 Open in IMG/M

Scaffold ID

Ga0100403_1000307 Open in IMG/M

Source Dataset Name

Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-01t

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	45904
Total Scaffold Genes	66 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (10.61%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

45904

Total Scaffold Genes

66 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (10.61%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Aquifer → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Aquifer → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Source Dataset Sampling Location
Location Name	USA: Utah
Coordinates	Lat. (^o)	38.9383	Long. (^o)	-110.1342	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Utah

Coordinates

Lat. (^o)

38.9383

Long. (^o)

-110.1342

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F022145	Metagenome	215	Y
F034486	Metagenome / Metatranscriptome	174	Y
F044785	Metagenome	154	Y
F044910	Metagenome	153	Y
F054439	Metagenome	140	Y
F085177	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0100403_100030718	F044910	N/A	MQNDAHSKKIAAPVTAPIGSTTVIAAQTDAYIYIHELIGDLASAGNLIVKCGTRTVASFTLDAGQGITVQDEPGMDGVPRFECRPGEAFILEVTGGTFNGAIDYSFRY*
Ga0100403_100030719	F085177	N/A	MLGTINDYAVIVNNVLKHVAPKVSPTVKPEYLDFMYKVDNNERIYTDVGVTGLGMAEIIPDGGIGASDAPIQGYSKNYVQMHFTKKVRLTFQTNFFLFESAAAKIKGSVKSKVIEGKNAIEHAKNYLAQSLLAQGFNTSFTWTPINAVGTSTPVATIGADSVEYWSQAHPREDGGAAWSNVIVDGATNSPQFTYSSLLAARRLHSEKKDGRGNPLVSDLDTLVVRRGSTAAQFAKTIKGTIDKGLAPQQTNVFNNAPATDTFKIVELSPYQNLAMDGLMWGMFDSKMMTQDFGFLYIEALPTRAEPAVIDLLGNQDLVLNFNSLAVMGASDLRGWMWSDGDGATV*
Ga0100403_100030724	F022145	GAG	MPTPKEIKKENYTVQVNYSEDSIKNKLLKFISKSGDEFEIGAEELASMLVGGVNSDTLEAAFVESDRINVVEVGRQLACVLDKDMKKGEKININYTHPYPIEFALIEQVYGIAKINMDVPVLVLTNDYIKDMRSKIRPEQEKFLQKFYSSFKNLKLNKK*
Ga0100403_100030725	F034486	N/A	MENEQSLKQRKIALAQSEHASTIIELMKDCMSQVPLVDDKSQWKTIVNTITLDTQGTMLRTMVDLLDAIRKGSLHEPKE*
Ga0100403_100030730	F054439	N/A	MYCGKRASSMKQMAYAKRVFGAQGTTKKEIALDVGYSANVANSISSHIENKPGFNYAMTQLAVDSNNLALAAMSEFKARGFSDFSNKDLIGALNAIGSAWSRFNQTKEKPNDHPSGNKLRTVILQNIENQTLNTQSTPIKKPPVVEVPVEMVEEGEQLDF*
Ga0100403_100030758	F044785	N/A	MKREAKWNTVLEQYLREKKFYCYYELKQTDTESFAFAKIRKVQWDGLQATEKNGLVWKLSDEESRPKPIDGLSTPPLPSYLVIKFKDKFCLIRFEKIVKLRNEGVISVSRSTAEEMSEKIIILKLK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0100403_1000307

Overview

Ecosystem & Geography

Associated Families

Sequences