NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114840_1000436

Scaffold Ga0114840_1000436


Overview

Basic Information
Taxon OID3300008258 Open in IMG/M
Scaffold IDGa0114840_1000436 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample HABS-E2014-0110-3-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9819
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (68.75%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.8271Long. (o)-83.1945Alt. (m)Depth (m)7.9
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027776Metagenome193Y
F051705Metagenome143N
F056414Metagenome137Y
F079788Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0114840_100043610F056414AGGAGMKLTNYQRSQLKAAACFGCSQIDKVAASLQRENPDAFWRESELHQRSFYHEPMSYGSPVPHRSYVQRLVVRRRELDNEQRLIMAQNHYLEQTYQIGVGA*
Ga0114840_10004366F051705GAGGMQITATFQDEQEAIKAIHSERAWQTLYEINHVLRSNRKHGLPFEQTVSQIQASVNDALALIPD*
Ga0114840_10004368F079788AGGAGMDNDDEIESWASIVLGLMATVFFFIGVVAVIVSVCMAFGYYTHQPICGSIAALFTQECK*
Ga0114840_10004369F027776N/AMVVRMMNPLQVEIAKTVFAHLPAVGNIGLISREELATMLHTACTDAALAGWARGTETTQRRLDQEMEILREELKATQTELAYAKAN*
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