Basic Information | |
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Taxon OID | 3300008259 Open in IMG/M |
Scaffold ID | Ga0114841_1000025 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0132-C-NA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Michigan |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 144608 |
Total Scaffold Genes | 145 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 115 (79.31%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales | (Source: IMG-VR) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erie, USA | |||||||
Coordinates | Lat. (o) | 41.7026 | Long. (o) | -83.2538 | Alt. (m) | Depth (m) | 6 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F097447 | Metagenome / Metatranscriptome | 104 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0114841_100002537 | F097447 | GGAGG | MAIPGVKTLIRDRFYSVSRQDTPVGPRIVAIARRSTANNTGSVADLDVVRVTNEADVITAFGDGSDAHRAYLELVLAGAGRIYIVPLPSDTKWDTDTDSPVATGTVTSVSYGGSVFDAAFIAAEAAIPDIIIPWGRGAHPDDWQSPATPSDDAKIGFVADNTSTVSSNWAYQVAAKVKDISENINPCIAIMGVKPYVSTTETMTPGQVSTHLALTNLPDRNASASFKEVGPYVVVVAAEIKPVNYQSGTTEFGYANGAAHVAGALSLLPSYSSLVNKALYNVEAVRYAPSRTQQTALATKGVNTVVINFNKIPVFGEGLTFGWATSDYTRLSTKRIVDDATSVVRQACQRFVGEPSNIQTRNAMETAITSGLRGMQIVGALLGSDFTVSYIPNENKAIVDLILTPAFELKEIEVRVAINL |
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