NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114841_1000714

Scaffold Ga0114841_1000714


Overview

Basic Information
Taxon OID3300008259 Open in IMG/M
Scaffold IDGa0114841_1000714 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0132-C-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)43349
Total Scaffold Genes76 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (30.26%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7026Long. (o)-83.2538Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F056430Metagenome137Y
F058814Metagenome134Y
F066566Metagenome / Metatranscriptome126N
F068461Metagenome124Y
F099284Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0114841_100071442F068461N/AMYKIFLTIALIAIFLFKQSHDSKQYKVEFENRLEFNSKELRTVIAEVWNINN*
Ga0114841_100071450F066566N/AMKISNNNKKIITFGAILLSIILALYIFNLQKYKTNCKSLENIDKIELETRLRELSDKNEQLARQIDYDAVAIQHAQNQINEFRVKCKNCTYHLSTNWEN*
Ga0114841_100071466F056430N/AMNIKIFKTRKEFKESANGLFEDSFYYLHLPAKLNESTNPNIPYVAYARYIEKTIHGEDASEVKGFKPSQNQRITDRLQEELIKLLTKDAEEIVLNSESYEVIVKKSEGNLQTAINKLINTTFNLRKCQDKKHCPSENIFLYINNHEVYLSKRQTIKIFKRFHRFYL*
Ga0114841_100071473F099284N/AMKETKTAYILALIKTKGFVEAKNINQLALALDIKPENLRAIIDSIEVANAVDDKARHNYHDYFFKGKGKKKKGTVILCYKWANDTKSVLSDKFKEILGVK*
Ga0114841_10007148F058814GGAMLSKESGAKAYAIIYLLALLSYLIFIWIDISEPIKQETFDNLGKFLFYAGSGFFAIIGMGNITLFKK*
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