NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114841_1001005

Scaffold Ga0114841_1001005


Overview

Basic Information
Taxon OID3300008259 Open in IMG/M
Scaffold IDGa0114841_1001005 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0132-C-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16214
Total Scaffold Genes33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (30.30%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7026Long. (o)-83.2538Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001840Metagenome / Metatranscriptome627Y
F007798Metagenome / Metatranscriptome344Y
F031030Metagenome / Metatranscriptome183N

Sequences

Protein IDFamilyRBSSequence
Ga0114841_10010051F007798N/AMKDTTLKQLVRDRNGQPRGYVVATVINDSVRVGWSYTNTKAGDRFDKRKGFAIALGRAENGWGKNVRVPHNVSKSLDSIAKRS
Ga0114841_100100513F001840GGAMKDQDSIFLICDCYEHGLLVEKFKDEHEVSISLFERGLKGRTLCWSERLRWCWQILRYGKPWSDFVILNTENQKQLKEFLNECK*
Ga0114841_100100515F031030GAGGMGMFDDVVCKYPLPLPEDPKGYCNNKYQTKDFDNAMDVYEIREDGTLWLHCAEYEYTDGNPNAKSLIEKLPTRKEIKTWWQQIFPITDTVRLYAYDSDTNETYDYWIEYDVIFVDGKVTGAKVIEFTATDNSERKEQHRKDVEYWTKRRNFEKTKFYILFGKPYNKTVKIVCNKIHTVSYWLSYKIWELEKFLKI*
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