NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114841_1012676

Scaffold Ga0114841_1012676


Overview

Basic Information
Taxon OID3300008259 Open in IMG/M
Scaffold IDGa0114841_1012676 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0132-C-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4493
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (33.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7026Long. (o)-83.2538Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005175Metagenome / Metatranscriptome409Y
F055677Metagenome / Metatranscriptome138N
F090367Metagenome / Metatranscriptome108N
F105047Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0114841_10126764F005175N/AMIDKELHVEDVIEMYNEKILILQKEIDRLNEEVQALNLQLQKLNNVIS*
Ga0114841_10126765F105047GAGGMKHINYDKVIVEWLDIQSCDNAWSSLDEFDKLLPAKCTTIGYLYEDNKDWIKTFATYSINENLEDFDIGDAVVIPRGCILSIKKIEN*
Ga0114841_10126766F090367N/AMKHKLAQWQEEKKLKNKDAAKFLGLKGTNPTVTLLRWKNCQRIPHPRFMKQITKLTGITPIDFYEAWYETHKL*
Ga0114841_10126769F055677AGGAMKEKIKQVNDLCASNGTYINQHGKKTVSAWSKIKYFREVFGTEFGINCVIQEHSDRYIIMKCIITKCDPEHIIATGYSKQFRDKPGYLEIAETFAITRALSIMGILLEDMTSK
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