Basic Information | |
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Taxon OID | 3300008259 Open in IMG/M |
Scaffold ID | Ga0114841_1016164 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0132-C-NA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Michigan |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3942 |
Total Scaffold Genes | 10 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (50.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED203 | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erie, USA | |||||||
Coordinates | Lat. (o) | 41.7026 | Long. (o) | -83.2538 | Alt. (m) | Depth (m) | 6 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F005175 | Metagenome / Metatranscriptome | 409 | Y |
F055677 | Metagenome / Metatranscriptome | 138 | N |
F090367 | Metagenome / Metatranscriptome | 108 | N |
F105047 | Metagenome / Metatranscriptome | 100 | N |
Protein ID | Family | RBS | Sequence |
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Ga0114841_10161641 | F055677 | AGGA | MKEKIKQVNELCAANGAYVNQHGKKTVSAWSKIKYFREVFGTEFGINCRIIEHSDRYVIMKCEILGYDPERIVASGYSKQFRDKPGYLEIAETFAITRALSIMGILLEDMTSK |
Ga0114841_10161646 | F090367 | AGGAG | MKHKLTLCQEEKKLPNKDFAKLLGLKGTNPTVTLLRWKKCQRIPHPKFMKIITDKTGITPNDFYEAWYATHKL* |
Ga0114841_10161647 | F105047 | GAGG | MRHINYDKVIVEWLDISSEGCDDAWNTEDQLKNLVPAICTTIGYLYEDNKDWIKTFATFSFNSDNTIDFGDCVCIPRGVIKSIRKLEN* |
Ga0114841_10161648 | F005175 | N/A | MIDQELTVEIVCEMYEEKIVLLKKEIDRLNEEVQALNLQLQKANNVIS* |
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