Scaffold Ga0114841_1040295

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114841_1040295

Scaffold Ga0114841_1040295

Overview

Basic Information
Taxon OID	3300008259 Open in IMG/M
Scaffold ID	Ga0114841_1040295 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0132-C-NA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2337
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (33.33%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.7026	Long. (^o)	-83.2538	Alt. (m)		Depth (m)	6
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000962	Metagenome / Metatranscriptome	820	Y
F012669	Metagenome / Metatranscriptome	278	Y
F045700	Metagenome / Metatranscriptome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114841_10402952	F012669	N/A	MTEQIYMNLKDAVKRPKFDLKNINRANTQFKRLVDNYQKWNEDEGVNEPRSTYEDDIIECLGHYDLDGYQLAEYLHDYKYVEPNTELVDILDDALFVKSSLEREMFAQWVKENFLTIPEDVIGKKVNAKQNLRKYEDHYITGIRPDTYQVTVSENATKQGGWIVGFENVTFVD*
Ga0114841_10402953	F000962	N/A	MNIHVPEEIKSKYPYMEFRGKQRQLNDRIVIEAYNHAINQNFFYSFDEDFFWFPGQIPDYKLPKVS*
Ga0114841_10402954	F045700	GGA	MNIRPSQCFECETGTYKDVTINYFSELSDGRTCITKDVTIQRCDTCGAEIFDSKASQLVENNIRQQYPDYYEHSRS*

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