NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114841_1141830

Scaffold Ga0114841_1141830


Overview

Basic Information
Taxon OID3300008259 Open in IMG/M
Scaffold IDGa0114841_1141830 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0132-C-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2342
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7026Long. (o)-83.2538Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006220Metagenome378Y
F033795Metagenome176Y
F040618Metagenome161N

Sequences

Protein IDFamilyRBSSequence
Ga0114841_11418301F033795N/AINLYKEVLKLDPKDRDAWENMVWLMWSMAINKKDTAWLFEAEKFAKMYLSINPNGYRAFEYVGQFYRIMMVDERLAIRYYESALRWKDAPETTFHSLTSLYLKNGDKVRAIGNCRYNLKRFPNDPYAKSKLKELTK*
Ga0114841_11418304F006220GAGGMKKFKKYNEELSLASGTEMMKASQMRTVVFNDKTKYNRKVKHKKGSNDE*
Ga0114841_11418306F040618GGAMTVNVKDVSDNSSCIGYVGQGTWFDGKSFIVTQYKANPTCWYFFVYNDFTPAKNYFDGVDSFGNEIWHLNPDNGEMCGKTYLYSTMTDRLYVPFAISQPTKEKSPTFLFEIS*
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