Scaffold Ga0114841_1152447

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114841_1152447

Scaffold Ga0114841_1152447

Overview

Basic Information
Taxon OID	3300008259 Open in IMG/M
Scaffold ID	Ga0114841_1152447 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0132-C-NA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	912
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Nitrosopumilus sp.	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.7026	Long. (^o)	-83.2538	Alt. (m)		Depth (m)	6
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000766	Metagenome / Metatranscriptome	899	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114841_11524473	F000766	N/A	ADGTEFDIISYDLSVPPVEVTTSQPAGAQEYVAYKFILYRDGTDSTKGPTFKGYQAKATIATPRQRVIRFPVYCFDVETDRYNVIVGHEGRARERIDTLEAIEENGDIVTWQDLTTGESRQVAIEQITFTRMTPPDRGFTGYGGMLTMTVRTV*

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