Scaffold Ga0114336

Basic Information
Taxon OID	3300008261 Open in IMG/M
Scaffold ID	Ga0114336_1001215 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-C-NA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-C-NA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Michigan

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	25407
Total Scaffold Genes	81 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	38 (46.91%)
Novel Protein Genes	13 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (30.77%)
Associated Families	13

Scaffold Components

Scaffold Length (bps)

25407

Total Scaffold Genes

81 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

38 (46.91%)

Novel Protein Genes

13 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (30.77%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.7026	Long. (^o)	-83.236	Alt. (m)	Depth (m)	5.7
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erie, USA

Coordinates

Lat. (^o)

41.7026

Long. (^o)

-83.236

Alt. (m)

Depth (m)

5.7

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F013631	Metagenome / Metatranscriptome	269	Y
F024290	Metagenome / Metatranscriptome	206	Y
F027828	Metagenome / Metatranscriptome	193	Y
F036765	Metagenome / Metatranscriptome	169	Y
F048940	Metagenome / Metatranscriptome	147	Y
F053990	Metagenome / Metatranscriptome	140	Y
F058096	Metagenome / Metatranscriptome	135	Y
F061794	Metagenome / Metatranscriptome	131	Y
F073458	Metagenome / Metatranscriptome	120	Y
F081258	Metagenome / Metatranscriptome	114	Y
F082582	Metagenome / Metatranscriptome	113	Y
F085684	Metagenome / Metatranscriptome	111	Y
F091925	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114336_10012152	F036765	AGGAG	MTIRETELLKLFSKANQLDLSVEVREDKDGDYIVRIYEMFHPEGFDETVFINQQGETNWDKRCYSFDYMMDVLDGMLEEKRQEKIKEQKRQELIARLTDEEKDLLGVK*
Ga0114336_100121527	F085684	GAGG	MVRTTVYAYAEVERAYKILSELVQRENKLHEMDMTIMSQHLDEIQYEILPMLEEIVYFDPTP*
Ga0114336_100121531	F053990	N/A	MMYSSSQGGFKMIDTCILHDDYEDFAQKFLGVDYEDYVNLQLGLGDEDEIEVEHPVGV*
Ga0114336_100121532	F073458	N/A	MSAKLIALAAEIVDTNPAGSQLIVNLTNAETGADIIEALDNYDSTVLENHTQPVDSEDEGYVSFTDADGTVTYV*
Ga0114336_100121545	F013631	GGA	MITDVFHYTTSRWDWHDGNVNQMWIQEIEESHDCYKYIAVAYNPRKDSSMVMSEPRCYADTLQWVRKFCGSFSILPEFSILPV*
Ga0114336_100121546	F081258	N/A	MTITFPRLSAGIYEVQKDSNTVGFIRKATASKWIVTDVVDTPQHVTKTLKDAKDACINLIIFDVVDNTPADDYNDSVEVDEINHELNKKLEGSLHCYKQVPGTDKFKEVSPTEFGFAEPTLEPIEF*
Ga0114336_100121551	F061794	N/A	MPFTKKFPKSGETKHIRVPVVYADLVLELMELFERRFDVDKGKHLLKKYISNLS*
Ga0114336_100121554	F027828	N/A	MLIGFKSVKMTELTTETMIDTVLTIEEILTEKQLTALRDIMYFYKEFELELYEYPPEDTLFTKTQRELFDIFDIK*
Ga0114336_100121556	F091925	N/A	MTSISFTSGELLDIISALEEKENALYLAENYQLSAYYMNLGCQFQKVYDKLQEVAGEKRVAKLVLTAN*
Ga0114336_100121565	F082582	N/A	MTVDFSKDVMLGMLRKGQTGTQLLNILDVIVPDETPEMTREYVCDQLGIADCPENDDEIAAYLAAV*
Ga0114336_100121568	F058096	N/A	MNAQLTVDECKVMWVVGALERLATLGMIGPDIPLKLSSNAVEDYLEIDEHRQLLFDSDFEIATIFTALANDECDPEIQDPDDLKPIIDMLIEYKDNRTEIVRYALMQQIV*
Ga0114336_100121571	F048940	N/A	VIQVTAAQRMEKQFFLHFISLVNEVQGKQKLPSQIQVNRKSAWCKKVSNPKQKKDALARI
Ga0114336_10012159	F024290	GGAG	MTLEEILEEYGQEVLDTYYELFPDKDITKFGDRFCGPVGSFENFVLDCYHSTGSDELETLEDFTNGVFQEYYYYDEQTATGFVFYNEH*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114336_1001215

Overview

Ecosystem & Geography

Associated Families

Sequences