Basic Information | |
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Taxon OID | 3300008261 Open in IMG/M |
Scaffold ID | Ga0114336_1002342 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-C-NA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Michigan |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 14282 |
Total Scaffold Genes | 37 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 22 (59.46%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erie, USA | |||||||
Coordinates | Lat. (o) | 41.7026 | Long. (o) | -83.236 | Alt. (m) | Depth (m) | 5.7 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F000345 | Metagenome / Metatranscriptome | 1253 | Y |
F072274 | Metagenome / Metatranscriptome | 121 | Y |
F099175 | Metagenome / Metatranscriptome | 103 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0114336_100234229 | F000345 | GGA | MSEEKPNEFGKALQEWWDSDACKELQKAHRESIQKAVGKYFMLSEEDKCDMVQAICCIMCKAEEEGTSHRGLQDALGIYPAGFWVDHLMDVHNALWSYYHDKKQEEELKQDIEMLQNFTET* |
Ga0114336_10023423 | F099175 | GGAGG | MLSKLEETIKEEQVQDLKQFAEYLGVDFEDYLEFLHPDVDFDDYSR* |
Ga0114336_10023424 | F072274 | AGG | MSENNEMDGYISSNGLWAAVPYGKRYISIYNGEQICLHNTLETAKKFIQKQNRKSK* |
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