NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114336_1009528

Scaffold Ga0114336_1009528


Overview

Basic Information
Taxon OID3300008261 Open in IMG/M
Scaffold IDGa0114336_1009528 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-C-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6208
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (68.75%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7026Long. (o)-83.236Alt. (m)Depth (m)5.7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000263Metagenome / Metatranscriptome1424Y
F000441Metagenome / Metatranscriptome1136Y
F000852Metagenome / Metatranscriptome860Y
F006846Metagenome / Metatranscriptome363Y
F022414Metagenome / Metatranscriptome214Y

Sequences

Protein IDFamilyRBSSequence
Ga0114336_100952812F006846N/AMESLHGKRIQMRMLIEFVERYLMRPKRLREAIEAVVHENDELLRRLSEYKEEGPTNLTWAEGDRWYGWTYNKSKGRYYFDDIGNESLMGLWEDQWAREEAEAK*
Ga0114336_10095282F000263AGGMNREDIGLPPHLQRMVNADVSGLDILHGELKNLMLIAEQDLASAIEQEELSEEAMDSMVRTECEGRLDTLVELYQLTYDLSFAIGIRTENRKDGHL*
Ga0114336_10095284F000441AGGAGGMKMSDEYINDQLSTAQKLLWGGSETENIEAHNIISKLIKDRVEQISI*
Ga0114336_10095285F000852AGGAMTTKREYLKQQGITVGVRGRFSGAAKVALQEAADKGITFTAEAPVKKAK*
Ga0114336_10095286F022414GAGGMAKTTEIKLAEQLANLTDDHWFNPAIFGRYLAEQPMHTIDRVMEMVAYIISEQAKTYQVHKVRGTSSEGLLLANELNECIKAYQEVNLISNLKLPKPTVYNVKPKEETKRIQFGWREDKDPFQ*
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