Scaffold Ga0114336

Basic Information
Taxon OID	3300008261 Open in IMG/M
Scaffold ID	Ga0114336_1013636 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-C-NA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-C-NA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Michigan

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9479
Total Scaffold Genes	21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (19.05%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

9479

Total Scaffold Genes

21 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (19.05%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.7026	Long. (^o)	-83.236	Alt. (m)	Depth (m)	5.7
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erie, USA

Coordinates

Lat. (^o)

41.7026

Long. (^o)

-83.236

Alt. (m)

Depth (m)

5.7

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002234	Metagenome / Metatranscriptome	579	Y
F003904	Metagenome / Metatranscriptome	462	Y
F014128	Metagenome / Metatranscriptome	265	Y
F057138	Metagenome / Metatranscriptome	136	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114336_10136361	F057138	N/A	MKRILTLLSLITSLFATKAFAENLKASTEAGYTTHYIVNGVARTEAQAFGGVNIGATYFGVDAYLGATIIPVSSALDESHWTAGVGKGFKIVDGVTVRLDGQAFRHLTAIPGAPNSTEVAGIISLENIVATPYLKGSHDLDLDQTGYVVGLKRSTDVFGWFTVTPLVEYGKFTDYDFKTAKLTVSKLLFNHLEPFAEVGYYDNNFGVNKYNFA
Ga0114336_101363610	F014128	N/A	MEQLQKMGIQIGFLISGLFGSILMATKNDKTDAKSVVLSLVGGMSAANFLTPVLVDTLNIVNVKHQNGVAFIAGFLGLKLVELVSEKFLEKVSGTHKKKTPKRKPKKS*
Ga0114336_101363611	F003904	N/A	MDNLIPNIKKYLLAVLLPTAIFVILALSSLKDIEKAFVRFRFGRDITLYLRRSTDNLTYLGAAYTATGDKKFLEEFNAHLKERQNYFNNEVFISKILTQDELKEFRVGLDISNELAKEVEGPAFEKMDSKAFFSDKYLDYKKRIYLSKEKFRDLINDSSEKIIHNETKLLNIYLYSLAGVVLFLVYLIKHDNSAPMKKKPLKRKKK*
Ga0114336_101363612	F002234	N/A	LVEERRKGEEMLAQRDDIINKLQKEKSELNQKYDDQLWQLTDKAKEVAKEADQNKATLDTMGGMFGLNAVFWGLKKFVISALTTIVIFVIVFVVLRLLATVNPAAAAAFSIFNMLGSMSVSIIKTLTPKAFELSNLISKDKVEEFKSPLVKIVDVIQELKEKQKEFPDRVYPVTEALKRFDKEMDSREKDLIDEILKEQKWIK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114336_1013636

Overview

Ecosystem & Geography

Associated Families

Sequences